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RCSB PDB Visualize Features

157712 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

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Visualize Related Features

3DViewer

3D Structure Viewers

View PDB structures in 3D using NGL from any entry's Structure Summary page.

A 3D View (NGL) User Guide is available.


VisualizeLigandsPoseview

PoseView

Biotin bound to Streptavidin

PDB ID:1STP

PoseView images are 2D diagrams that show a ligand and interacting residues.

Black dashed lines indicate hydrogen bonds, salt bridges, and metal interactions. Green solid line show hydrophobic interactions and green dashed lines show π-π and π-cation interactions.

Access PoseView images in the Ligand Chemical Component section on an entry's Structure Summary.

Learn more about&nbspPoseView.



ProteinFeature

Protein Feature View

Provides a graphical summary of a full-length protein sequence from&nbspUniProt and how it corresponds to PDB entries. It also loads annotations from external databases (such as Pfam) and homology models information from the Protein Model Portal. Annotations visualizing predicted regions of protein disorder and hydrophobic regions are displayed.

Learn more about&nbspProtein Feature View.

Examples:&nbspBreast Cancer Type 1 Protein,&nbspGag-Pol Polyprotein, and&nbspHemoglobin Alpha (shown image).

This feature is available from the Molecular Description widget on Structure Summary pages and by entering a UniProt ID below.



HumanGene

Human Gene View

Illustrates the correspondences between the human genome and 3D structure. All human genes have been mapped to representative PDB structure protein chains (selected from sequence clusters at 40% sequence identity) to show which regions of a gene are available in PDB coordinates.

Learn more about&nbspGene View.

Examples:&nbspBreast Cancer 1 (early onset) and&nbspHemoglobin, Alpha 1 (shown image).

This feature is available from the Molecular Description widget on Structure Summary pages and by entering an&nbspHGNC Human Gene Symbol below (examples).



Pathway

Pathway View

Explore metabolic pathways maps that identify pathway components with PDB structures and homology models.

Maps can be accessed from the Protein View (see example&nbspP29401), and the main&nbspPathway View page.


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RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.